euL1db
The European database of L1-HS retrotransposon insertions in humans

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   Click to select columns
  • id
  • srip_id
  • study_id
  • integrity
  • chromosome
  • genomic_start
  • genomic_stop
  • genomic_strand
  • reference_start
  • reference_stop
  • pcr_results
  • class
  • family
  • sub_family
  • sub_group
  • tsd_del_size
  • tsd_del_sequence
  • inversion_detected
  • inversion_start
  • inversion_stop
  • polya_size
  • lineage
  • method_id
  • pcr_5_junction
  • pcr_3_junction
  • forward_primer
  • reverse_primer
  • allele_frequency
  • transduction_5p_detected
  • transduction_5p_coordinates
  • transduction_5p_source
  • transduction_3p_detected
  • transduction_3p_coordinates
  • transduction_3p_source
  • l1_activity
  • sample_id
  • gene_name
  • reference_l1hs
  • mrip_id
  • sequence
  • comments

164 SRIP in this sample from selected study
SRIP ID Chromosome Start Stop Strand Sub group Lineage PCR Reference SampleID GeneName
srip41 chr1 12875658 12875658 - unknown germline validated no 598 .
srip559 chr1 42484031 42484031 + unknown germline validated no 598 HIVEP3
srip1689 chr1 75192755 75192755 - unknown germline validated no 598 CRYZ
srip3611 chr1 113889049 113889049 + unknown germline validated no 598 .
srip3729 chr1 118829527 118829527 + unknown germline validated no 598 .
srip3909 chr1 119553576 119553576 + unknown germline validated no 598 .
srip4142 chr1 149308656 149308656 + unknown germline validated no 598 LOC645262
srip4504 chr1 159574406 159574406 + unknown germline validated no 598 .
srip6955 chr1 223341471 223341471 + unknown germline validated no 598 .
srip8675 chr10 31737633 31737633 - unknown germline validated no 598 ZEB1
srip8849 chr10 44607613 44607613 - unknown germline validated no 598 .
srip8934 chr10 58207486 58207486 - unknown germline validated no 598 .
srip10817 chr10 108614152 108614152 - unknown germline validated no 598 SORCS1
srip11867 chr10 124455307 124455307 + unknown germline validated no 598 .
srip14850 chr11 48756138 48756138 + unknown germline validated no 598 .
srip17240 chr11 94684521 94684521 + unknown germline validated no 598 .
srip17491 chr11 104555983 104555983 - unknown germline validated no 598 .
srip17861 chr11 110377654 110377654 - unknown germline validated no 598 .
srip18658 chr11 134305342 134305342 - unknown germline validated no 598 .
srip19926 chr12 12933562 12933562 - unknown germline validated no 598 APOLD1
srip20506 chr12 28226261 28226261 - unknown germline validated no 598 .
srip21764 chr12 39591227 39591227 - unknown germline validated no 598 .
srip21966 chr12 43256779 43256779 - unknown germline validated no 598 .
srip22795 chr12 48719101 48719101 - unknown germline validated no 598 .
srip22917 chr12 55604811 55604811 + unknown germline validated no 598 .
srip22957 chr12 55782233 55782233 + unknown germline validated no 598 OR6C66P
srip23534 chr12 73789278 73789278 + unknown germline validated no 598 .
srip26089 chr12 118187092 118187092 + unknown germline validated no 598 KSR2
srip26144 chr12 126802505 126802505 - unknown germline validated no 598 .
srip26685 chr13 19078303 19078303 + unknown germline validated no 598 .
srip27493 chr13 27488225 27488225 + unknown germline validated no 598 .
srip28674 chr13 61462127 61462127 - unknown germline validated no 598 .
srip29662 chr13 61734770 61734770 + unknown germline validated no 598 .
srip29793 chr13 65548932 65548932 - unknown germline validated no 598 .
srip30603 chr13 78055230 78055230 + unknown germline validated no 598 .
srip31208 chr13 85871524 85871524 - unknown germline validated no 598 .
srip35528 chr14 34139944 34139944 - unknown germline validated no 598 NPAS3
srip36058 chr14 36675085 36675085 + unknown germline validated no 598 .
srip37666 chr14 66498421 66498421 - unknown germline validated no 598 .
srip40339 chr15 48184871 48184871 - unknown germline validated no 598 .
srip42277 chr15 83551474 83551474 - unknown germline validated no 598 HOMER2
srip43068 chr15 100931075 100931075 - unknown germline validated no 598 .
srip44070 chr16 17754965 17754965 - unknown germline validated no 598 .
srip47903 chr17 34272245 34272245 + unknown germline validated no 598 .
srip49816 chr18 45164388 45164388 + unknown germline validated no 598 .
srip50113 chr18 50097664 50097664 - unknown germline validated no 598 DCC
srip50428 chr18 51762503 51762503 - unknown germline validated no 598 .
srip52910 chr2 13183466 13183466 + unknown germline validated no 598 .
srip53183 chr2 23190788 23190788 - unknown germline validated no 598 .
srip53617 chr2 23960294 23960294 + unknown germline validated no 598 .
srip54657 chr2 42051611 42051611 + unknown germline validated no 598 .
srip54981 chr2 56784122 56784122 - unknown germline validated no 598 .
srip55191 chr2 66859887 66859887 - unknown germline validated no 598 .
srip55233 chr2 69168644 69168644 - unknown germline validated no 598 .
srip55692 chr2 76578038 76578038 - unknown germline validated no 598 .
srip55816 chr2 79929635 79929635 + unknown germline validated no 598 CTNNA2
srip56263 chr2 82098187 82098187 + unknown germline validated no 598 .
srip56593 chr2 91640356 91640356 + unknown germline validated no 598 .
srip56774 chr2 103495864 103495864 - unknown germline validated no 598 .
srip57287 chr2 113267431 113267431 - unknown germline validated no 598 TTL
srip57871 chr2 134668741 134668741 + unknown germline validated no 598 .
srip58387 chr2 143285340 143285340 + unknown germline validated no 598 .
srip59230 chr2 147021176 147021176 + unknown germline validated no 598 .
srip60543 chr2 181000894 181000894 + unknown germline validated no 598 .
srip60671 chr2 183551792 183551792 + unknown germline validated no 598 .
srip60889 chr2 195937538 195937538 - unknown germline validated no 598 .
srip61031 chr2 199295720 199295720 - unknown germline validated no 598 .
srip61977 chr2 221503311 221503311 - unknown germline validated no 598 .
srip63117 chr20 9477795 9477795 - unknown germline validated no 598 .
srip64513 chr20 29921155 29921155 + unknown germline validated no 598 .
srip66621 chr21 29069129 29069129 - unknown germline validated no 598 .
srip67164 chr22 17247723 17247723 + unknown germline validated no 598 .
srip67872 chr22 22715839 22715839 + unknown germline validated no 598 IGL@
srip69619 chr3 656199 656199 - unknown germline validated no 598 .
srip71423 chr3 35496973 35496973 + unknown germline validated no 598 .
srip73443 chr3 59853016 59853016 + unknown germline validated no 598 FHIT
srip73544 chr3 70499460 70499460 - unknown germline validated no 598 .
srip73881 chr3 75101444 75101444 + unknown germline validated no 598 .
srip75103 chr3 84593013 84593013 - unknown germline validated no 598 .
srip75980 chr3 90485234 90485234 - unknown germline validated no 598 .
srip75997 chr3 95381607 95381607 - unknown germline validated no 598 .
srip76858 chr3 120697810 120697810 - unknown germline validated no 598 STXBP5L
srip77328 chr3 126520683 126520683 + unknown germline validated no 598 CHCHD6
srip77766 chr3 135943949 135943949 + unknown germline validated no 598 .
srip77897 chr3 139044488 139044488 + unknown germline validated no 598 .
srip78204 chr3 144609876 144609876 - unknown germline validated no 598 .
srip79668 chr3 167729512 167729512 + unknown germline validated no 598 GOLIM4
srip80077 chr3 175677816 175677816 - unknown germline validated no 598 .
srip80426 chr3 176091566 176091566 + unknown germline validated no 598 .
srip80886 chr3 181193308 181193308 + unknown germline validated no 598 .
srip81547 chr3 186372285 186372285 + unknown germline validated no 598 .
srip81554 chr3 187835042 187835042 - unknown germline validated no 598 .
srip82459 chr4 14214095 14214095 - unknown germline validated no 598 .
srip82602 chr4 14849344 14849344 + unknown germline validated no 598 .
srip82752 chr4 18162297 18162297 - unknown germline validated no 598 .
srip84638 chr4 47007730 47007730 - unknown germline validated no 598 .
srip85281 chr4 57496822 57496822 - unknown germline validated no 598 .
srip88909 chr4 103343890 103343890 + unknown germline validated no 598 .
srip90882 chr4 123495755 123495755 - unknown germline validated no 598 .
srip92257 chr4 134596743 134596743 + unknown germline validated no 598 .
srip92348 chr4 137767100 137767100 - unknown germline validated no 598 .
srip92830 chr4 138177642 138177642 + unknown germline validated no 598 .
srip93134 chr4 147225447 147225447 + unknown germline validated no 598 SLC10A7
srip93243 chr4 150278381 150278381 + unknown germline validated no 598 .
srip94430 chr4 170281747 170281747 - unknown germline validated no 598 .
srip95152 chr4 188783306 188783306 - unknown germline validated no 598 .
srip96089 chr5 8749690 8749690 + unknown germline validated no 598 .
srip96374 chr5 11391312 11391312 + unknown germline validated no 598 CTNND2
srip97238 chr5 26093283 26093283 + unknown germline validated no 598 .
srip98211 chr5 40041067 40041067 - unknown germline validated no 598 .
srip98424 chr5 44014416 44014416 + unknown germline validated no 598 .
srip98534 chr5 45445651 45445651 + unknown germline validated no 598 HCN1
srip98650 chr5 49470164 49470164 - unknown germline validated no 598 .
srip99118 chr5 57279598 57279598 + unknown germline validated no 598 .
srip99173 chr5 62878134 62878134 + unknown germline validated no 598 .
srip99720 chr5 79198634 79198634 + unknown germline validated no 598 .
srip99773 chr5 84239400 84239400 - unknown germline validated no 598 .
srip100805 chr5 89450921 89450921 + unknown germline validated no 598 .
srip101239 chr5 98680709 98680709 - unknown germline validated no 598 .
srip101245 chr5 98899039 98899039 - unknown germline validated no 598 .
srip102544 chr5 109567634 109567634 + unknown germline validated no 598 .
srip105268 chr5 155620044 155620044 + unknown germline validated no 598 .
srip105743 chr5 161463222 161463222 - unknown germline validated no 598 .
srip108729 chr6 46310371 46310371 + unknown germline validated no 598 .
srip110167 chr6 71980803 71980803 + unknown germline validated no 598 .
srip110441 chr6 74935388 74935388 - unknown germline validated no 598 .
srip110698 chr6 77980581 77980581 - unknown germline validated no 598 .
srip111188 chr6 78445820 78445820 - unknown germline validated no 598 .
srip113279 chr6 123853709 123853709 - unknown germline validated no 598 TRDN
srip113633 chr6 142291365 142291365 + unknown germline validated no 598 .
srip114266 chr6 148121496 148121496 - unknown germline validated no 598 .
srip114784 chr6 148195839 148195839 + unknown germline validated no 598 .
srip114916 chr6 155667625 155667625 - unknown germline validated no 598 .
srip114960 chr6 157968349 157968349 - unknown germline validated no 598 ZDHHC14
srip115709 chr6 162181442 162181442 + unknown germline validated no 598 PARK2
srip117511 chr7 53652387 53652387 - unknown germline validated no 598 .
srip118658 chr7 70188485 70188485 - unknown germline validated no 598 AUTS2
srip119439 chr7 84901336 84901336 - unknown germline validated no 598 .
srip120706 chr7 93146458 93146458 - unknown germline validated no 598 CALCR
srip123778 chr8 1123259 1123259 - unknown germline validated no 598 .
srip124100 chr8 5829127 5829127 - unknown germline validated no 598 .
srip125699 chr8 36270879 36270879 - unknown germline validated no 598 .
srip126618 chr8 67381725 67381725 - unknown germline validated no 598 .
srip128544 chr8 98540858 98540858 - unknown germline validated no 598 .
srip129496 chr8 115881819 115881819 + unknown germline validated no 598 .
srip130195 chr8 131041330 131041330 + unknown germline validated no 598 .
srip130486 chr9 235571 235571 - unknown germline validated no 598 DOCK8
srip131150 chr9 6290848 6290848 + unknown germline validated no 598 .
srip131597 chr9 9236751 9236751 + unknown germline validated no 598 PTPRD
srip131725 chr9 18649955 18649955 - unknown germline validated no 598 ADAMTSL1
srip131934 chr9 28990487 28990487 + unknown germline validated no 598 .
srip132758 chr9 32092619 32092619 - unknown germline validated no 598 .
srip132943 chr9 32463715 32463715 - unknown germline validated no 598 DDX58
srip134533 chr9 95667622 95667622 - unknown germline validated no 598 .
srip135097 chr9 105073781 105073781 + unknown germline validated no 598 .
srip136106 chr9 125419620 125419620 + unknown germline validated no 598 .
srip136987 chrX 47111186 47111186 - unknown germline validated no 598 .
srip137969 chrX 63059211 63059211 + unknown germline validated no 598 .
srip138423 chrX 69859597 69859597 + unknown germline validated no 598 TEX11
srip139061 chrX 75949898 75949898 + unknown germline validated no 598 .
srip139553 chrX 95853013 95853013 + unknown germline validated no 598 .
srip141041 chrX 122664526 122664526 - unknown germline validated no 598 .
srip142032 chrX 143704826 143704826 + unknown germline validated no 598 .
srip142435 chrY 19097610 19097610 + unknown germline validated no 598 .